The Journal of Neuroscience
● Society for Neuroscience
Preprints posted in the last 7 days, ranked by how well they match The Journal of Neuroscience's content profile, based on 928 papers previously published here. The average preprint has a 0.47% match score for this journal, so anything above that is already an above-average fit.
Anderson, E.; Kist, A.; Simon, Z. D.; Raj, J.; Ray, S.; Astudillo, D.; Becker, N.; Norbu, T.; Khim, S.; Lambert, D.; Alvarez, J.; Kadlec, K.; Allawala, A. B.; Tremblay-McGaw, A.; Verhein, J.; Racine, C.; Naldec, P.; Alhourani, A.; Piper, K.; Fan, J.; Wang, D. D.; Khambhatti, A. N.; Sellers, K. K.; Starr, P. A.; Sugrue, L. P.; Chang, E. F.; Krystal, A. D.; Lee, A. M.
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Pathological activity within frontal cortical circuits is common in many neuropsychiatric disorders, such as obsessive-compulsive disorder (OCD). We developed an invasive brain mapping protocol in which temporary electrodes are implanted in candidate sites to identify personalized stimulation targets that can acutely relieve OCD symptoms. We found that stimulation within segments of the anterior limb of the internal capsule (ALIC) focally suppressed the structurally and functionally connected region of prefrontal and cingulate cortex. By leveraging the topographic organization of the ALIC, we reversibly inactivated frontal cortical sites with ALIC stimulation to determine which cortical regions are necessary for sustaining OCD symptoms. Stimulation of ventral capsule (VC) near the globus pallidus within the ALIC was associated with suppression of lateral orbitofrontal cortex activity and acute and long-term improvements in OCD symptoms. These results provide a paradigm for leveraging ALIC topography to deliver targeted connectomic neuromodulation to frontal cortex to treat neuropsychiatric disorders.
Chawla, A.; Carter, S.; Wood, A.; Staffieri, S.; Dodgshun, A.; Eisenstat, D.; Sullivan, M.
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Background: Platinum-based chemotherapy is known to cause severe and debilitating hearing loss, but unlike cisplatin, the true incidence of carboplatin-induced hearing loss remains unclear. We evaluated functional hearing outcomes in children receiving carboplatin to determine the incidence and severity of ototoxicity. Procedure: We identified a large cohort of children with cancer treated with carboplatin and graded their audiograms using the SIOP ototoxicity scale. Patients with inadequate audiological follow-up, prior hearing loss, or exposure to cisplatin were excluded. Fishers exact test, logistic regression, and ROC analyses were performed to investigate associations of demographic, treatment, and exposure-related risk factors with incidence of hearing loss. Results: 200 patients were included, all of whom had been treated with carboplatin. Only nine (4.5%) patients developed clinically significant hearing loss (SIOP grade [≥]2). Younger age at first exposure to carboplatin was the only significant predictor of hearing loss (OR = 0.7888, p=0.0241). Age [≤]28 months was significantly associated with hearing loss (OR 12.37, p=0.0042). No other risk factors or exposures were statistically significant. Conclusions: Clinically significant carboplatin-associated hearing loss was uncommon (incidence 4.5%). We show that young age is the single-most important risk factor for hearing loss; of nine children who developed hearing loss, eight were aged [≤]28 months. Children below this age have twelve-fold higher odds of developing hearing loss compared to those above this age (OR 12.37). These findings will allow physicians to provide more appropriate counselling to families regarding ototoxic risk and support intensified hearing surveillance in young children.
Gupta, I.; Farkouh, L.; Kilpatrick, L. A.; Korthas, J.; Salamon, N.; Schneider, B. N.; Joshi, S. H.; Alger, J. R.; O'Connor, M. J.; O'Neill, J.
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Aim: To determine whether the neural phenotype (whole-brain resting-state functional connectivity pattern) of attention deficit hyperactivity disorder associated with prenatal alcohol exposure (ADHD+PAE) differs from that in unexposed children with ADHD of probable familial origin (ADHD-PAE). Method: Resting-state functional MRI was acquired from 26 children with ADHD+PAE, 25 with ADHD-PAE, and 25 typically developing (TD) children, all aged 8-13 years. Mean connectivity matrices based on the Cole-Anticevic Brainwide Network Parcellation of the brain were compared between the groups. Results: Within the frontoparietal network (FPN), children with ADHD+PAE showed widespread lower group-mean connectivity than children with ADHD-PAE; effects were concentrated primarily in cerebellar-cerebral cortical and cerebral cortical-cerebral cortical connections. Children with ADHD-PAE showed widespread hyperconnectivity relative to TD children. Children with ADHD+PAE showed mixed hyper- and hypoconnectivity relative to TD. Interpretation: These results are consistent with other MRI findings indicating that ADHD+PAE is neurally distinct from ADHD-PAE; PAE may be associated with broadly reduced connectivity, especially across cerebellar-cerebral cortical systems.
Syvalahti, T.; Tokariev, M.; Nevalainen, P.; Tuiskula, A.; Metsaranta, M.; Haataja, L.; Vanhatalo, S.; Tokariev, A.
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Abstract Background Prediction of long-term neurodevelopmental outcomes remains challenging after perinatal asphyxia. Here, we studied whether computational metrics of brain function derived from neonatal EEG are associated with long-term neurodevelopment in infants with perinatal asphyxia. Methods Total of 36 term-born infants with perinatal asphyxia with or without hypoxic-ischemic encephalopathy were studied with neonatal multichannel electroencephalography (EEG). We computed local EEG amplitudes and phase-amplitude coupling (PAC), as well as large-scale functional cortical networks estimated using amplitude-amplitude correlations (AAC) and phase-phase correlations (PPC). These EEG-derived markers were tested for associations with neurodevelopmental outcomes at two years, assessed using the Griffiths Scales of Child Development, 3rd edition (GMDS-III). Results EEG amplitudes showed positive associations with GMDS-III Foundations of Learning and General Development scores across most electrodes during quiet sleep, with the strongest effects observed at frontal and central regions (r = 0.44-0.66). PAC showed negative associations with the same scores mainly over parietal and temporal regions (r = -0.45 to -0.55). Cortical AAC networks demonstrated the most robust and widespread negative associations in all frequency bands during quiet sleep (r = -0.47 to -0.54), with 70-72% of connections significant in high delta frequency. In turn, PPC networks showed frequency-selective and more spatially constrained negative associations during quiet sleep (r = -0.48 to -0.53), involving 5-12% of the network. Conclusions Both local and network-based metrics in the newborn brain show significant association with neurodevelopmental outcome at 2 years after perinatal asphyxia.
Kocsis, Z.; Calmus, R. M.; Kasa, J.; Berger, J. I.; Rhone, A.; Brown, G.; Diefelt-Streese, C.; Bowren, M.; Taylor, P. N.; Sarrett, M. E.; Choi, I.; McMurray, B.; Kawasaki, H.; Griffiths, T. D.; Howard, M. A.; Petkov, C. I.
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There is substantial interest in understanding neurological impact and recovery over time, but there is a dearth of longitudinal assessment extending from minutes to months surrounding neural system impact. We compared rare intraoperative recordings in three patients, obtained immediately before and after anterior temporal lobe (ATL) resection during a semantic prediction task, with longitudinal source-localized electroencephalography (EEG) obtained 2-6 weeks before and 2 and 6-14 months after surgery. Relative to controls (n = 20), task performance showed sustained impairment in the two left-hemisphere patients and delayed impact in the right-hemisphere patient. Consistent with theory on ipsilateral and contralateral hemisphere compensation, all three patients exhibited bilateral EEG alterations in speech responses and effective connectivity that did not recover to pre-operative levels. Direct comparison of the datasets for intrinsic neurophysiological biomarkers associated with timescales of processing ({tau}INT) and excitatory-inhibitory balance (aperiodic slope, {chi}SPEC) showed a striking months-long reduction in rapid timescale processing and gradually increasing aperiodic slope (e.g., putatively increased cortical inhibition) in the ipsilateral hemisphere of all three patients. Amidst these neurophysiological alterations, task performance did not return to pre-operative levels. These rare longitudinal patient data advance a framework to broadly evaluate neurological impact over multiple timeframes.
Schmidlechner, T.; Stumpo, V.; Jehli, E.; Zerweck, L.; Bellomo, J.; Gönel, M.; Müller, F.; Sebök, M.; Bink, A.; Kulcsar, Z.; Weller, M.; Regli, L.; Fierstra, J.; van Niftrik, C. H. B.
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Hypoxia-targeted BOLD MRI is a novel technique, which probes oxygenation physiology in response to a controlled transient hypoxia stimulus. In glioblastoma, the signal response is spatially and temporally heterogeneous. We developed a voxel-wise temporal decomposition framework for hypoxia-targeted BOLD MRI that separates the arrival of responses, transition phases, and steady state during controlled isocapnic hypoxia. Twenty healthy controls underwent 3-T BOLD MRI during a double hypoxic step challenge to establish a normative reference. Three patients with newly diagnosed glioblastoma were included as proof-of-concept cases. For each voxel, we estimated response arrival delay (Delaycorr), delay to plateau, delay to return and an O2-normalized steady-state response (HypoxiaSS). Healthy-control maps were used to construct a voxel-wise normative atlas and, for HypoxiaSS, a global-response-adjusted model for patient deviation mapping. In healthy controls, HypoxiaSS showed lower supratentorial between-subject variabilitythan both whole-stimulus comparators (coefficient of variation: 1.77 versus 2.36 for Hypoxiaavg) and higher voxel-level step-to-step agreement (ICC(2,1): median 0.951 versus 0.792 for Hypoxiaavg). Whole-stimulus averaging exhibited a systematic step-2 signal amplification present in 19 of 20 subjects, which was absent from HypoxiaSS. Asingle global response scalar explained a median 72.5% of voxel-wise between-subject variance in HypoxiaSS. In proof-of-concept patient analyses, G-adjusted HypoxiaSS deviation maps and timing maps identified spatially coherentabnormalities that were partly complementary and extended beyond conventional MRI-defined lesion margins.Temporal decomposition improves the stability and interpretability of hypoxia-targeted BOLD MRI and provides a practical framework for population-referenced physiological mapping and atlas-based deviation mapping in glioblastoma.
Wood, A. M.; Detwiler, R. E.; Coughlin, M.; Pollard, C. E.; Alt, J. A.; Pulsipher, A.; Kramer Stratton, J.
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Background: Chronic rhinosinusitis (CRS) is a heterogeneous inflammatory airway disease associated with impaired mucociliary clearance and persistent inflammation. While prior work has focused on inflammatory and molecular pathways, the physicochemical properties of mucus itself remain poorly characterized. This study aimed to define compositional and biophysical features of CRS mucus that may contribute to dysfunction. Methods: A prospective cross-sectional study was conducted in 15 adults undergoing endoscopic sinus surgery (11 CRS, 4 controls). Mucus was collected from the middle meatus. Hydration was measured by lyophilization. Ionic composition was quantified using mass spectrometry. Viscoelasticity was assessed via oscillatory shear rheology. Total protein, total carbohydrate, sialic acid (Sia) and fucose (Fuc) content were quantified using enzymatic and chemical assays. Statistical comparisons were performed using nonparametric tests. Results: CRS mucus exhibited significantly higher Ca2+; and Mg2+; concentrations (approximately two-fold; p<0.05) and increased variability in hydration and ion content compared to controls. Rheology showed greater heterogeneity and a non-significant trend toward increased viscoelasticity in CRS. Total protein and carbohydrate content were not significantly different; however, the carbohydrate-to-protein ratio was significantly reduced in CRS (p=0.04). Sia content and Sia-to-carbohydrate ratio were significantly elevated in CRS (p=0.04 and p=0.002), particularly in CRS with nasal polyps. Fuc content did not differ between groups. Conclusions: CRS mucus demonstrates coordinated alterations in ionic composition and glycosylation, characterized by increased cation content, hypersialylation, and reduced carbohydrate-to-protein ratios. These changes may contribute to altered mucus properties and impaired mucociliary clearance, highlighting mucus composition as a potential therapeutic target in CRS.
Hett, K.; Dubois, A.; Bonitz, I.; Considine, C. M.; Eaton, J.; Mcknight, C. D.; Claassen, D. O.; Donahue, M. J. J.; Trujillo, P.
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Purpose. The choroid plexus (ChP) is the primary source of cerebrospinal fluid and an emerging marker of cerebral health, with enlargement and hypoperfusion reported in aging and neurodegeneration. However, frequent ChP calcifications can confound volumetric and perfusion measures. Although computed tomography (CT) is the gold standard for detecting calcification, it is rarely available in research MRI. Quantitative susceptibility mapping (QSM) offers an alternative sensitive to diamagnetic mineralization but lacks validated susceptibility thresholds. Method. Participants underwent CT and MRI within four weeks, including 3D T1-weighted and a multi-echo gradient echo QSM MRI. ChP calcifications were identified on CT using standard diagnostic criteria. Using the Bayes decision boundary framework, we identified optimal susceptibility thresholds for detecting diamagnetic signals consistent with calcification and compared these thresholds with multiple density levels measured on gold standard CT images. Results. Across all participants (n=20; age=62.2+-12.0 yrs), the optimal susceptibility threshold separating background ChP signal from calcifications was -0.10 ppm at 60 HU (low-density) and -0.15 ppm at 100 HU (high-density). Susceptibility values within calcified tissue exhibited a linear relationship with CT-derived tissue density. A significant positive association was observed between ChP volume and calcification volume among participants with detectable calcification (beta=2.26, p=0.047). Conclusion. This work should provide a practical framework for quantifying ChP calcifications routinely from MRI. The observed relationship between ChP volume and calcification volume highlights the importance of accounting for calcified tissue, particularly when calcification burden is substantial, when investigating ChP abnormalities in aging and neurodegenerative disease.
Aguila, C. A.; Zhou, Z.; Lavelle, S. B.; Ojemann, W. K. S.; Kim, J.; Walsh, K.; Mournani, S. S.; Lucas, A.; Sinha, N.; Feys, O.; Scheid, B. H.; Davis, K. A.; Litt, B.; Conrad, E. C.
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Objective: Interictal spikes have been proposed as a biomarker for both localizing seizure onset zones (SOZ) and tracking changes in seizure risk with neurostimulation in patients with drug-resistant epilepsy. Electrical stimulation can modulate spike rates acutely, and it has been proposed that measuring this modulation can help localize the SOZ. However, it is unclear whether stimulation-induced spike rate changes reflect epilepsy-specific pathology in the stimulated network or simply intrinsic regional excitability, which limits our understanding of their utility in epilepsy surgery planning. Methods: We analyzed low-frequency stimulation (LFS; 1 Hz) applied during a clinical seizure-induction protocol systematically targeting multiple brain regions in 43 patients with drug-resistant epilepsy undergoing intracranial EEG monitoring. A validated, automated spike detector was used to quantify pre-, during-, and post-stimulation spike rates. We tested whether the stimulation-evoked spike rate response (i) tracks the expected change in seizure risk from a seizure induction protocol, (ii) varies with anatomical stimulation site and epilepsy localization, (iii) localizes the SOZ beyond baseline spike rate, and (iv) is accompanied by changes in spike morphology. Results: Nearby LFS acutely increased spike rates in high-spiking channels (inter-stimulation median 2.25 vs. during-stimulation 4.25 spikes/min; p < 0.001), with effects attenuating with distance and resolving within approximately 30 seconds of stimulation offset. Mesial temporal lobe stimulation produced the largest increase in nearby spike rates relative to temporal neocortex and other cortex (Kruskal-Wallis p = 0.003), but this effect did not differ between patients with and without mesial temporal lobe epilepsy. A random forest classifier incorporating stimulation-evoked modulation features achieved an AUC of 0.787, comparable to a resting-state spike model (AUC 0.747; DeLong p = 0.81), indicating that stimulation-evoked spike changes do not add localizing information beyond resting-state spike rates. Stimulation produced a small but significant shift in spike morphology toward broader, higher-amplitude discharges (PERMANOVA p < 0.001), consistent with recruitment of a broader neuronal population. Significance: LFS-evoked increases in interictal spike rates reflect intrinsic regional excitability, greatest in the mesial temporal lobe, rather than epilepsy-specific pathology, and do not improve SOZ localization over resting-state spike rates. These results argue against using the change in spikes with stimulation to localize the SOZ. On the other hand, the transient spike rate increase induced by a pro-epileptic protocol supports the acute change in spike rate as a biomarker of the effect of stimulation on seizure risk, with potential to guide parameter selection for epilepsy neuromodulation.
Minoccheri, C.; Joo, P.; Hu, X.-S.; Affendi, H.; Elayyan, F.; Harville, A.; McDonald, N. J.; Botero, T.; DaSilva, A. F.
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Neuroimaging based pain decoding faces two underappreciated challenges: between subject variability that prevents classifiers from generalizing across patients, and within session cross validation designs that inflate reported accuracy by conflating within person and between person variance. Here we address both using portable functional near infrared spectroscopy (fNIRS) during pharmacologically verified local nerve anesthesia. Twentyfive patients with clinically painful teeth underwent 36 channel bilateral fNIRS during percussion before ("Pre") and after ("Post") local nerve anesthesia. In 13 block-success patients, a paired Pre versus Post comparison with healthy tooth control identified three temporal hemodynamic response function (HRF) features (late slope, mean first derivative, and baseline normalized amplitude) whose analgesia interaction effects (d = 0.63 to 0.79) exceeded that of raw general linear model (GLM) amplitude (d = 0.56), with a significant difference-in-differences interaction (p = 0.011). Per-patient calibration with these features yielded leave one subject out (LOSO) AUC = 0.68 to 0.76 for nonlinear classifiers (permutation p = 0.002), with HbO-specific feature selection achieving the best performance (RF AUC = 0.760); a healthy tooth negative control was non-significant. End to end deep learning on raw time series (CNN LSTM AUC = 0.719) was competitive with feature based classifiers, while linear models did not reach significance. Critically, head to head comparison of within-session CV and LOSO on the same data revealed mean inflation of +0.13 AUC across all model types, including deep learning, demonstrating that high within session accuracy alone does not establish subject-independent validity. Exploratory analyses suggested complementary roles for oxyhemoglobin (HbO; within patient analgesia detection) and deoxyhemoglobin (HbR; cross patient information), and that trial to trial response variability may complement amplitude for cross patient pain detection. These results show that per patient calibration with temporal HRF features supports subject independent analgesic-state detection under strict LOSO evaluation, and that within-session validation (standard in the fNIRS pain- decoding literature) can substantially overestimate performance.
Atik, A. F.
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Objective: To determine whether absolute ictal energy on intracranial EEG identifies brain regions whose epileptogenic involvement is attenuated under existing baseline-normalized, dynamic-systems, and event-based frameworks. Approach: Intracranial EEG from 56 patients (five centers; 21 SEEG, 35 ECoG) was analyzed using the Teager-Kaiser Energy Operator computed as z-scored and raw envelopes; energy-dominant network regions (EDNRs) were defined as electrodes whose raw-energy rank exceeded their z-score rank by at least 2 positions. Hilbert decomposition characterized instantaneous amplitude and frequency. Main results: EDNRs were identified in 51 of 56 patients (91%; mean 3.4). Hilbert decomposition revealed elevated baseline amplitude in EDNRs relative to both non-involved regions (p < 0.001) and potential seizure onset zones (PSOZs, the top-ranked electrodes under both metrics; p = 0.029), with EDNRs participating in seizure-frequency dynamics comparable to PSOZs (mean ictal frequency shift +3.7 versus +4.1 Hz). EDNR detectability correlated directly with electrode count (Spearman r = 0.899, p < 0.001) without plateau. Significance: Absolute ictal energy identifies an epileptogenic network component with elevated baseline amplitude attenuated under baseline-normalized metrics. The dual-metric framework defines a complementary energy-based axis and establishes the second layer of a two-layer approach with seizure onset and propagation mapping as the first layer. EDNR detectability scales with electrode count, directly relevant to SEEG implantation strategy and to network-level inferences from heterogeneously covered cohorts.
Diaz-Fong, J. P.; Peel, H. J.; Zhang, K.; Qian, J.; Lewis, M.; Wong, W.-W.; Leuchter, A. F.; Tadayonnejad, R.; Voineskos, D.; Konstantinou, G.; Lam, E.; Blumberger, D. M.; Feusner, J. D.
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Background: Individuals with body dysmorphic disorder misperceive defects of their physical appearance. Current evidence suggests that visual processing abnormalities may underlie this core symptom. Separate pre-clinical studies testing perceptual and attentional interventions and non-invasive neuromodulation suggest that these visual processing abnormalities may be modifiable, but their combined effects on neural connectivity and perceptual processing remain unclear. Methods: Thirty-nine unmedicated men and women with body dysmorphic disorder or subclinical body dysmorphic disorder received intermittent theta burst stimulation and continuous theta burst stimulation targeting the lateral parietal cortex combined with a visual attention modification paradigm during functional magnetic resonance imaging, in a crossover design. Dynamic effective connectivity within dorsal and ventral visual stream pathways was calculated, and global visual processing biases were assessed using the face inversion effect before and after stimulation plus attention modification. Results: Intermittent theta burst stimulation resulted in increased connectivity in higher-level dorsal visual stream pathways during naturalistic viewing following attention modification, whereas continuous theta burst stimulation was associated with reduced connectivity in lower-level dorsal pathways and increased connectivity in ventral stream pathways. These changes were accompanied by differential effects on global visual processing, with stimulation type modulating the magnitude of the face inversion effect. Conclusions: Combined neuromodulation and visual attention modification modulate visual system connectivity and perceptual processing in individuals with body dysmorphic disorder symptoms. These findings support a mechanistic link between dorsal-ventral stream dynamics and perceptual biases. Integrating neuromodulation with perceptual retraining may represent a viable approach for targeting core symptoms of distorted appearance perception.
Sadikov, A.; Cai, L. T.; Xiao, J.; Yuh, E. L.; Choi, H. L.; Sun, X.; Mac Donald, C. L.; Vassar, M. J.; Diaz-Arrastia, R.; Giacino, J. T.; Okonkwo, D. O.; Robertson, C. S.; Stein, M. B.; Temkin, N.; McCrea, M. A.; Jain, S.; Manley, G. T.; Mukherjee, P.; TRACK-TBI Investigators,
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Generalizable neuroimaging biomarkers that detect cerebral cortical changes after traumatic brain injury (TBI) and predict patient outcomes are needed to improve care and to develop targeted therapies. We used morphometric inverse divergence (MIND) analysis of structural MRI to investigate cortical gray matter morphological networks cross-sectionally and longitudinally after TBI and correlate these with symptoms, disability and cognition six months after injury. Our findings support the Triple Network Model from functional MRI of post-traumatic alterations in the relationship between task-positive, default mode and salience networks. However, the strongest associations between early cortical similarity metrics and long-term patient outcomes involved the dorsal attention network and the limbic network as well as similarity metrics across Mesulam's hierarchy of laminar differentiation. Since MIND mapping of cortical gray matter networks only requires data that is a routine part of standard clinical MRI protocols and does not need image harmonization across different scanners, this work reports a promising new tool that is immediately available for advancing research and clinical care in TBI.
Leppert, I. R.; Benbachir, A.; Campbell, J. S.; Coelho, S.; Feizollah, S.; Nelson, M. C.; Brais, B.; Cocozza, S.; Pike, G. B.; La Piana, R.; Tardif, C. L.
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Background: Autosomal recessive spastic ataxia of Charlevoix-Saguenay (ARSACS) is a genetic disease characterized by spasticity and ataxia which reflects involvement of the corticospinal tracts (CST) and cerebellum. The primary involvement of the middle cerebellar peduncles (MCP) and transverse pontine fibers (TPF) at the crossing with the CST, and their role in the pathophysiology of the disease, is currently debated. Objectives: Advanced MRI techniques capable of isolating sub-voxel microstructural parameters can test the hypothesis that the MCP and TPF are abnormally large, compressing the CST at their crossing, and potentially impairing CST development. Methods: Tract macro- and micro-structural properties, including axon and tract caliber, axon density and geometry, and myelin content were estimated from diffusion-relaxometry and magnetization transfer imaging. These features were analyzed along segments of the CST, MCP, and TPF of 9 patients and 9 age-matched controls. Results: While the CST showed significant decreases in tract size, axon caliber, and myelination throughout its length compared to controls (p<0.01), the MCP and TPF were relatively unaffected. In our group, neither the MCP nor the pons were enlarged. The proximal MCP showed an increase in axon caliber. Conclusions: The increase in fractional anisotropy and axon density towards the center of the TPF could be driven by geometric confounds related to differences in the relative sizes of the CST and TPF compared to controls. This highlights the importance of investigating tract-specific microstructural profiles, particularly in regions of geometric complexity. The findings confirm the involvement of the CST, with a relatively limited involvement of the MCP and TPF.
Halli, P.; Weiss, F.; Gerhardt, S.; Zhang, J.; Sommer, W. H.; Kiefer, F.; Kirsch, P.; Gerchen, M. F.
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In a single-blind randomized controlled trial, we investigated the effectiveness of real-time fMRI neurofeedback delivered in 7 runs over three sessions across two weeks in N = 65 patients with alcohol use disorder. The intervention targeted modulation of ventral striatal cue reactivity to alcohol-related cues as well as enhancement of prefrontal control mechanisms in the right inferior frontal gyrus. The study design incorporate three experimental groups that either were instructed to downregulate a ventral striatum signal, upregulate the right inferior frontal gyrus, or upregulate negative functional connectivity between these two structures. In two active control groups participants were instructed to either up- or downregulate the primary auditory cortex. We did not find an effect of ventral striatal downregulation or negative connectivity feedback, and a reduced striatal activation in the right inferior frontal gyrus upregulation group was accompanied by concurrent lower activation in the target structure, suggesting that our intended modulation approaches were not effective. Identified problems that might have contributed to this unexpected outcome might have been the use of continuous feedback presentation that potentially confuses regulation target and reward processing in the ventral striatum, counterintuitive regulation directions, a lack of explicit strategy guidance and transparency about the targeted process, and generally the difficulty to recruit a sufficient number of eligible voluntary participants for a well-powered study with a complex design. These insights emphasize the complex challenges of real-time fMRI neurofeedback interventions for the treatment of substance use disorders and could provide guidance for the development of more effective future approaches.
Yang, K.; Shi, P.; Huang, H.; Musio, F.; Baazaoui, H.; Aydin, O. U.; Hilbert, A.; Hamadache, R. E.; Yalcin, C.; Zhang, M.; Falcetta, D.; de la Rosa, E.; Shit, S.; Prabhakar, C.; Wittmann, B.; Rokuss, M. R.; Kirchhoff, Y.; Al-Maskari, R.; Hoeher, L.; Juchler, N.; Casamitjana, A.; Cleary, J.; Schmick, A.; Baumgartner, P.; Deseoe, J.; Vandans, O.; Lee, D.; Oh, K.; LaBella, D.; Mazher, M.; Niederer, S. A.; Qayyum, A.; Liu, Y.; Chen, J.; Kim, W.; Asawalertsak, N.; Kim, M.; Shin, D.; Park, S.-H.; Kikuchi, S.; Zhang, Y.; Liu, J.; Cui, Y.; Qiu, Y.; Verschuur, A.; Zhang, J.; van der Schaaf, I.; Su, R.;
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We present the TopBrain 2025 Challenge, the first benchmark for fine-grained multiclass segmentation of the whole brain vasculature in both computed tomography angiography (CTA) and magnetic resonance angiography (MRA). Building on the TopCoW challenge, TopBrain scales vessel annotation from the Circle of Willis to the entire brain, introducing a dataset of 90 annotated volumes across 48 landmark vessel classes spanning arterial and venous systems, of which 50 training volumes are publicly released. Vessel definitions were consolidated from established neuroanatomical references into a unified annotation scheme, and vessel caliber measurements along the centerline are reported for the first time across the whole brain vascular anatomy. To address the unique challenges of multiclass brain vessel segmentation, we propose an evaluation framework that accounts for detection in segmentation performance, assesses anatomical plausibility, and introduces novel contamination metrics that characterize inter-class prediction errors. Fifteen teams from over 220 registered participants submitted algorithms to the benchmark. The top-performing teams built on nnUNet with principled system design choices, achieving around 80% Dice scores, near-zero invalid neighbor counts, over 60% F1 scores for side-road vessels, and below 18% foreground contamination ratio. Larger vessels are easier to segment, while smaller and more complex vessels remain the true bottleneck. The annotated datasets and podium-finish algorithms are made publicly available on Zenodo.
Noroozi, R.; Higgins Tejera, C.; Chen, M.; Briggs, F. B. S.; Bhargava, P.; Fitzgerald, K. C.
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The course of multiple sclerosis (MS) is highly heterogeneous, yet the biological mechanisms underlying this variability remain incompletely understood. Although metabolic alterations have increasingly been associated with disease progression, existing observational evidence is limited by confounding, reverse causation, and an inability to establish causal mechanisms. To bridge this gap, we used a metabolome-wide Mendelian Randomization (MR) framework, including thorough sensitivity analyses, to identify metabolites genetically linked to MS severity that can causally affect it. Bidirectional MR analyses revealed a subset of amino acid and lipid pathways with strong, consistent effects across different MR approaches, confirmed by tests for heterogeneity, horizontal pleiotropy, and LD confounding. For metabolites prioritized by metabolome-wide MR with evidence of causal effects, we conducted genetic colocalization at loci encompassing proximal enzyme-encoding genes, leveraging the corresponding instrumental variants to assess shared underlying genetic signals. This process revealed shared genetic signals between metabolite levels and MS severity, mapped to the FADS1/2 and CYP4F2 loci. A subsequent pathway-resolved set of cis-MR analyses across FADS1/2-derived polyunsaturated fatty acid (PUFA) metabolites, using a functional variant that proxies reduced {triangleup}5-desaturase activity, showed consistent effects indicating that FADS1 perturbation is associated with MS severity. Collectively, these results highlight FADS1 as a key driver of PUFA-related causal effects on MS severity in both systemic (circulating metabolites) and brain cell-specific contexts. Additional supportive cis-MR evidence implicates the disruption of CYP4F2 as another PUFA-metabolizing enzyme.
Low, Z. X. B.; Rowsthorn, E.; Nazem-Zadeh, M.-R.; Francis, M.; Robb, C.; Howcroft, M.; Whiriskey, R.; Brodtmann, A.; McNeil, J. J.; Law, M.
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We trained a self-configuring nnU-Net model for CMB segmentation in a heterogeneous multicenter sample (n=264), including 1.5T and 3T field strengths, SWI and T2*-GRE sequences, and community and clinical cohorts. Model performance was evaluated using 5-fold cross-validation with a focus on object-level detection metrics. Real-world performance was evaluated on scans from an unseen dataset of people with cerebrovascular disease (n=20). The model achieved 0.82 cluster Dice, 0.88 precision, and 0.77 sensitivity on hold-out test data. Notably, the model demonstrated a low false-positive rate, averaging 0.58 false positives (FPs) per scan, an improvement on existing publicly available models. The model achieved high performance in dataset of those with Alzheimer's disease and mild cognitive impairment (0.89 cluster Dice, 0.94 sensitivity), supporting its utility in clinical settings where ARIA-H monitoring is critical. In external validation, the model maintained high robustness with 0.79 sensitivity and 0.95 FPs per scan. By leveraging a heterogenous training strategy and a self-adapting architecture, we demonstrate that deep learning can achieve high-precision CMB detection that is robust to domain shifts. The low FP rate suggests this publicly available pipeline is suitable for automated screening and lesion counting in heterogenous large-scale clinical trials, reducing the burden of manual quantification.
Trasciatti, C.; Pilotto, A.; Tolassi, C.; Ragni, F.; Marcello, E.; Moroni, M.; Bovo, S.; Martinuzzo, C.; Pelucchi, S.; Caratozzolo, S.; Girotto, I.; D'Andrea, L.; Stringhi, R.; L. Benedet, A.; Pola, I.; Zetterberg, H.; Ashton, N.; Jurman, G.; di Luca, M.; Padovani, A.
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Alzheimer's disease (AD) is characterized by complex alterations in synaptic, glial, neuronal and inflammatory markers. Given its emerging role at the interface of synaptic dysfunction and inflammation, the astrocytic marker GFAP may represent a cross-domain hub linking synaptic, neuronal and inflammatory alterations. Using multivariate and network-based analyses we examined the relationships among cerebrospinal fluid (CSF) biomarkers of astrocytic activation and synaptic failure, inflammation, and neurodegeneration in biologically confirmed AD patients and healthy controls (HC). We studied 60 AD patients and 40 HC. CSF concentrations of Neurogranin, SNAP-25, CAP2, NfL, GFAP, IL-1 , IL-1{beta}, IL-8, MCP-1, TNF were measured. Associations were assessed using Spearman correlations, LASSO regression, and network analysis to characterize multivariate dependency structures. Compared with controls, AD patients showed significantly higher CSF levels of Neurogranin, SNAP-25, CAP2, NfL, GFAP, IL-1{beta}, TNF- .. In AD, synaptic biomarkers were strongly intercorrelated and associated with astroglial activation, inflammatory markers, and tau-related pathology. Network analysis identified GFAP as a cross-domain hub linking synaptic, inflammatory, and neurodegenerative domains in AD. In controls, GFAP was mainly associated with neuronal injury markers. Network-based modelling revealed a disease-related reorganization of biomarker connectivity in AD, with GFAP occupying a central cross-domain position, supporting a systems-level view of AD pathophysiology.
Alger, J. R.; Gupta, I.; Farkouh, L.; Korthas, J.; Shah, A.; Silverberg, A.; Salamon, N.; Schneider, B. N.; Joshi, S. H.; O'Connor, M. J.; O'Neill, J.
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Background: Prior neuroimaging suggests brain differences between children with attention deficit hyperactivity disorder due to prenatal alcohol exposure (ADHD+PAE) and non-exposed children with ADHD due to other, e.g., familial, causes (ADHD-PAE). There has been interest in regional brain levels of ;gamma-aminobutyric acid (GABA) and glutamate (Glu) measured in vivo with magnetic resonance spectroscopy (MRS) as possible indicators of local inhibitory, respectively, excitatory activity in ADHD. For the first time, we report here a comparison of GABA and Glu in ADHD+PAE vs. ADHD-PAE. Methods: At 3 T, we used J-difference-edited single-voxel MRS to assay GABA and Glu in 28 children with ADHD+PAE, 20 with ADHD-PAE, and 28 typically developing (TD) controls, all aged 8-14 years. MRS was sampled from midline anterior middle cingulate cortex (aMCC), the cognitive cingulate considered functionally relevant to ADHD. Spectra were fit with custom software, including a unique technique for isolating the GABA signal from the confounding macromolecular baseline (MMBL). Results: aMCC GABA was higher in ADHD+PAE and ADHD-PAE than in TD. GABA increased with age in TD, but not in ADHD+PAE or ADHD-PAE. Similar effects were observed for the ratios GABA/Glu and GABA/Glx. For GABA+MMBL (GABA+) these effects were not seen, rather GABA+ and MMBL increased with age for the ADHD+PAE group only. No significant effects were found for Glu or Glx. Conclusions: GABA in the aMCC does not distinguish the two etiologies of ADHD, rather elevated GABA that follows an abnormal developmental appears to be common to both. High GABA may reflect increased inhibition of the aMCC impairing its cognitive functions. GABA+ results in ADHD may not tract reliably with underlying GABA values. Negative results for Glu and Glx should be reexamined at shorter echo-times.